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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12238827_12239519_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12238827 - 12239519
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
TGCCTTTTAACA
Flanking Amino Acid:
EYSCRGGLENRLFPWGNKLQ
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
76.5
0.6
0.9
72.5
36.4
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
66
0.5
1.2
68.82
37.6

Associated Gene:

Gene:
SUMF1
Ensembl Gene ID:
ENSAPLG00000003538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029392
12222389 - 12247570
25182
ENSAPLT00000028444
12226566 - 12247570
21005
ENSAPLT00000003620
12224817 - 12249928
25112
ENSAPLT00000046488
12222389 - 12240853
18465
ENSAPLT00000040186
12224832 - 12247570
22739