Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12239635_12240568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12239635 - 12240568

Intron Length:

934

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

TTCTCTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAA

U12 Branch Point Sequence:

GTTTAAAGAACT

Flanking Amino Acid:

AEDGYKGTAPVTAFPPNGYG

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

73.7

35.7

Major BPS

72.6

0.56

1.2

75.9

36.3

Major PPT

84.6

0.78

0.6

81.1

Minor 5ss

39.4

-1.2

3.3

58.2

40.5

Minor BPS

46.8

-0.1

2.1

73.84

41.6

Associated Gene:

Gene:

SUMF1

Ensembl Gene ID:

ENSAPLG00000003538

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028444

12226566 - 12247570

21005

ENSAPLT00000003620

12224817 - 12249928

25112

ENSAPLT00000046488

12222389 - 12240853

18465

ENSAPLT00000040186

12224832 - 12247570

22739

ENSAPLT00000029392

12222389 - 12247570

25182