About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1224077_1224889_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1224077 - 1224889
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCTTCTTTCATT
Flanking Amino Acid:
MKGSWLWMLSFI
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.4
0.5
1.1
65.8
44.1
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
61.9
0.46
1.7
75.88
41.7

Associated Gene:

Gene:
LRTM1
Ensembl Gene ID:
ENSAPLG00000012963
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013491
1224070 - 1229272
5203