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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12245028_12247459_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12245028 - 12247459
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
CCCTAGTGACCA
Flanking Amino Acid:
KKGGSYMCHKSYCYRYRCAA
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
86
0.81
0.8
77.8
36.7
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
37.4
-0.9
2.3
44.21
44.4

Associated Gene:

Gene:
SUMF1
Ensembl Gene ID:
ENSAPLG00000003538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040186
12224832 - 12247570
22739
ENSAPLT00000018075
12224832 - 12247570
22739
ENSAPLT00000003620
12224817 - 12249928
25112