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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12252254_12252928_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12252254 - 12252928
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GAGGATTTCATT
Flanking Amino Acid:
AEGAAPPPFQYSPDNVPGAD
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.5
0.64
0.8
73.1
31.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
42.9
-0.4
1.9
54.12
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001691
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001684
12251459 - 12253003
1545