Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12394559_12435711_F

Intron Information:

Intron Rank:

143477

Intron Class:

major

Intron Phase:

Intron Coordinates:

12394559 - 12435711

Intron Length:

41153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.4

0.66

0.9

75.4

37.4

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

77.8

0.87

80.84

27.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027298

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040572

12394433 - 12437673

43241