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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1244559_1248358_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1244559 - 1248358
Intron Length:
3800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
GTTTAGCATAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TTTAGCATAAAG
Flanking Amino Acid:
MEVKKTVDKGNFTSHTEQGS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
66.7
38.5
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
58.5
0.19
1.2
56.8
42.6
Minor 5ss
42.1
-0.9
3
48.7
47.3
Minor BPS
47.6
-0.3
2.2
62.73
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012290
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027623
1244472 - 1422728
178257