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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1248431_1254765_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1248431 - 1254765
Intron Length:
6335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
EVEWEDRDDVLRNAMVNRKT
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.4
0.84
0.7
85.5
27.4
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012290
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027623
1244472 - 1422728
178257