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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12486848_12487768_F

Intron Information:

Intron Rank:
150940
Intron Class:
major
Intron Phase:
Intron Coordinates:
12486848 - 12487768
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CCTTATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
85.1
0.79
0.7
82.3
28.9
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
69.6
0.69
1.5
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031108
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041705
12486068 - 12489506
3439
ENSAPLT00000041025
12477472 - 12489725
12254
ENSAPLT00000039709
12477472 - 12489725
12254