Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12487923_12488014_F

Intron Information:

Intron Rank:

150937

Intron Class:

major

Intron Phase:

Intron Coordinates:

12487923 - 12488014

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TGTTTCTTACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

68.4

36.9

Major BPS

61.3

0.28

30.6

Major PPT

85.5

0.8

79.9

32.2

Minor 5ss

33.7

-1.9

3.1

43.4

44.3

Minor BPS

57.3

0.09

1.8

64.96

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041025

12477472 - 12489725

12254

ENSAPLT00000039709

12477472 - 12489725

12254

ENSAPLT00000024829

12477472 - 12489725

12254

ENSAPLT00000041705

12486068 - 12489506

3439