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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12488156_12489132_F

Intron Information:

Intron Rank:
150950
Intron Class:
major
Intron Phase:
Intron Coordinates:
12488156 - 12489132
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCAACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGTATTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.8
0.56
0.9
70.5
39.5
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
54.1
0.12
1.7
65.46
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031108
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041705
12486068 - 12489506
3439