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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12503193_12504242_F

Intron Information:

Intron Rank:
134582
Intron Class:
major
Intron Phase:
Intron Coordinates:
12503193 - 12504242
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATCAGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.9
0.61
1
73.1
42.1
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
51.2
0.03
2.3
72.54
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022342
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037483
12489746 - 12504436
14691
ENSAPLT00000022416
12489746 - 12504363
14618