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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12514084_12517098_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12514084 - 12517098
Intron Length:
3015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATGGCC
5'SS Class:
major
3'SS Sequence:
CTGTGCTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTGTGCTTATTA
Flanking Amino Acid:
NMGNHLQPAPVESEEEDDNE
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
60
40.9
Major BPS
76.2
0.65
1
67
39.8
Major PPT
67.8
0.4
1
66.8
39.3
Minor 5ss
31
-2.2
3.5
43.1
44.1
Minor BPS
49.7
-0
2
62.38
44.7

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306