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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12517212_12517377_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12517212 - 12517377
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTCCTTACTT
Flanking Amino Acid:
FDTSLPTSHVYLGSDMEEFH
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.7
0.83
0.8
84.8
35.6
Minor 5ss
46.4
-0.4
2.8
64.2
41.4
Minor BPS
76.7
0.92
1.5
90.25
33.9

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306