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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12517581_12518450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12517581 - 12518450
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACCTTTTAAAT
Flanking Amino Acid:
KDRTFAVLAYSNVREREAHF
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.1
0.59
0.9
73.6
37
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
55.6
0.25
1.4
65.82
38.5

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306