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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12518601_12519966_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12518601 - 12519966
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCCTTTTATC
Flanking Amino Acid:
KVLEIRTQSDGIQQAKVQIL
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
84.2
0.77
0.8
84.9
28.2
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
64.8
0.45
1.6
75.87
34.4

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306