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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12524061_12524585_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12524061 - 12524585
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTTCTCATTT
Flanking Amino Acid:
KDESLPTNPIDFSYRVAACL
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.8
73.9
35.8
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
51.6
0.13
1.8
69.81
41.8

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306