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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12528172_12529138_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12528172 - 12529138
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTGTTTTTGATA
Flanking Amino Acid:
RPSTEHSWFPGYAWTIAQCR
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
60.7
39.9
Major BPS
72.8
0.57
1
81
30.3
Major PPT
77.9
0.63
1
76.5
37.7
Minor 5ss
30.9
-2.2
3
31.1
42.4
Minor BPS
67.5
0.55
1.1
72.69
33.6

Associated Gene:

Gene:
CRBN
Ensembl Gene ID:
ENSAPLG00000003897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004017
12514017 - 12529322
15306