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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12538971_12539605_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12538971 - 12539605
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCATACTGAATC
Flanking Amino Acid:
LRPYQDFIMDSREANTNSKI
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.2
0.88
0.6
89.2
19.7
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
57
0.2
1.6
65.3
40.1

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033