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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12539857_12540025_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12539857 - 12540025
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCTTTCACT
Flanking Amino Acid:
LYELDVAQYIGLPLNGSLEE
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
74.3
0.55
0.8
71.1
35.8
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
71.8
0.77
1.7
87.23
39

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033