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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12540220_12540934_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12540220 - 12540934
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGGT
5'SS Class:
major
3'SS Sequence:
TTTATTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCAGTTATAACA
Flanking Amino Acid:
EDYLRILRYFRFYGRIAEKP
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.2
41.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.6
0.55
1.1
73
42
Minor 5ss
33.4
-1.9
3.5
50.3
45.9
Minor BPS
49.5
-0
1.7
60.03
40.3

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033