About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12541062_12541310_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12541062 - 12541310
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
RDLTVNSMFLGLDGMLYDFF
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.8
74
36.4
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033