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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12541450_12542049_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12541450 - 12542049
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
GTGGGATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTGTTGAAAT
Flanking Amino Acid:
GEKHGTITARLHEQNFEITT
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.3
67.1
41
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
68
0.4
1.1
62.4
47.6
Minor 5ss
38.3
-1.3
3
41.8
44.9
Minor BPS
50.9
0.11
2
73.83
43

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033