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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12542244_12542755_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12542244 - 12542755
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGAG
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGCCTTACGG
Flanking Amino Acid:
LFTPGLRSVAELFEKKNYEL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84
0.77
0.7
76.5
32
Minor 5ss
21.7
-3.3
3.4
27.2
44.5
Minor BPS
49.4
-0.1
2.1
59.57
47.9

Associated Gene:

Gene:
TRNT1
Ensembl Gene ID:
ENSAPLG00000004258
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004368
12538209 - 12543241
5033