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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12550078_12550951_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12550078 - 12550951
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
VKILAPVSEEYDTKKTHSFQ
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83
0.74
0.8
78.2
34.4
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
IL5RA
Ensembl Gene ID:
ENSAPLG00000004282
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004389
12548525 - 12559278
10754