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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12551091_12551621_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12551091 - 12551621
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATT
Flanking Amino Acid:
WVTAELQPPPGAANTAVTNL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.4
0.5
0.9
65.8
40.8
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
65
0.55
1.5
81.43
34

Associated Gene:

Gene:
IL5RA
Ensembl Gene ID:
ENSAPLG00000004282
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004389
12548525 - 12559278
10754