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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12552021_12552983_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12552021 - 12552983
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGCTCTATAAAT
Flanking Amino Acid:
FQQLFNQNAIEKVNVPRNVS
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
91.3
0.93
0.6
88.5
21
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
57.8
0.32
1.7
74.97
41.5

Associated Gene:

Gene:
IL5RA
Ensembl Gene ID:
ENSAPLG00000004282
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004389
12548525 - 12559278
10754