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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12553130_12553760_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12553130 - 12553760
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTTTTTCTAACA
Flanking Amino Acid:
LINLKTGNEQIWNIYSNEFR
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
81.6
0.71
0.9
77.7
35.5
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
64.8
0.46
1.6
76.34
34.4

Associated Gene:

Gene:
IL5RA
Ensembl Gene ID:
ENSAPLG00000004282
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004389
12548525 - 12559278
10754