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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12556388_12559232_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12556388 - 12559232
Intron Length:
2845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCGACTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATCACTTAACT
Flanking Amino Acid:
TIVLVGIICKIVLPKKTRTI
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.6
0.6
0.9
72.6
37.3
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
71
0.74
1.5
82.96
37

Associated Gene:

Gene:
IL5RA
Ensembl Gene ID:
ENSAPLG00000004282
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004389
12548525 - 12559278
10754