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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12566431_12567534_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12566431 - 12567534
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
CTCCTTTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
GGTGGCTCATCT
Flanking Amino Acid:
SEQIRIPKISNAYARGSGSS
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
60.7
43.9
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
76
0.59
0.9
75.4
33
Minor 5ss
32.8
-2
3.3
40.3
39.5
Minor BPS
43.4
-0.4
2.2
61.71
47.5

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221