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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12567704_12569020_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12567704 - 12569020
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCACTCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCTCTCCCACTC
Flanking Amino Acid:
DNESEVRGYKVLYRWNRQSS
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
50
0
1.2
61.8
35.9
Major PPT
68.5
0.42
0.9
61.2
34.8
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
41.4
-0.6
1.9
52.03
39.6

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221