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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12569806_12570523_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12569806 - 12570523
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTGAA
U12 Branch Point Sequence:
GTTGAAGTACCT
Flanking Amino Acid:
QHKGRIQGYEVRCWRHDEKE
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
54.3
0.11
1.3
49.1
46.3
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
39.1
-0.7
2.5
62.66
46.8

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221