Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12573275_12573809_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12573275 - 12573809

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTACAA

U12 Branch Point Sequence:

AATGCTGCATCT

Flanking Amino Acid:

PSEKRRTEEALPEVTPANVS

Intron Amino Acid Position:

631

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.3

74.5

41.9

Major BPS

0.27

1.1

69.2

36.3

Major PPT

1.1

0.4

13.8

Minor 5ss

-1.2

2.8

52.1

Minor BPS

40.4

-0.6

2.3

59.34

44.2

Associated Gene:

Gene:

CNTN4

Ensembl Gene ID:

ENSAPLG00000004320

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004510

12566330 - 12711550

145221