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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12573960_12574665_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12573960 - 12574665
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTGCACT
Flanking Amino Acid:
FSVGWQAVSTVPEVIDGRTF
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.6
0.4
1
57.4
43.3
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
51.3
0.12
2.1
79.84
41.4

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221