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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12576821_12579292_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12576821 - 12579292
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTTCCCTACTT
Flanking Amino Acid:
DGDHFERVGGDSAGDLMIRS
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
72.4
0.5
1
67.8
37.2
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
65.5
0.57
1.9
88.6
36.6

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221