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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12579469_12599707_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12579469 - 12599707
Intron Length:
20239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
CCTTCATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTTCTCTATT
Flanking Amino Acid:
ASSTGSLVVKDPTRVMVSPF
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78.5
0.64
0.8
73.3
30.4
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
61
0.43
1.8
83.71
37.3

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221