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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12599836_12618974_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12599836 - 12618974
Intron Length:
19139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AAATACATAACT
Flanking Amino Acid:
KGKDILRENERISVLDDGSL
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
66.1
0.4
1
73
31.5
Major PPT
79.8
0.67
0.9
70.6
40.6
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
58
0.33
1.8
75.4
40

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221