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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12625144_12633419_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12625144 - 12633419
Intron Length:
8276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GCTTTATTCATT
Flanking Amino Acid:
NVARGQLIFYAQPNWIQKIS
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.1
0.68
0.9
73.8
35.4
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
48.9
-0
2
68.96
42.4

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221