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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12633605_12634227_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12633605 - 12634227
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
TVKLECFALGNPVPTISWRR
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.8
0.74
0.8
82.5
28.2
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004510
12566330 - 12711550
145221