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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12634331_12640774_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12634331 - 12640774
Intron Length:
6444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
CTTATGTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGTCTCTTATGT
Flanking Amino Acid:
PPNPTHPQERWGDGGV*
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.7
44.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78
0.63
0.9
72.3
37.6
Minor 5ss
32.1
-2
3.6
44.8
44.2
Minor BPS
53.1
0.17
1.9
73.71
43

Associated Gene:

Gene:
CNTN4
Ensembl Gene ID:
ENSAPLG00000004320
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029510
12634312 - 12711550
77239