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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1267836_1268556_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1267836 - 1268556
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTGTATGC
Flanking Amino Acid:
ILTHPELRPLALQVMSDFNS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.4
0.66
1
74.2
40
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
43
-0.5
2.3
58.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012290
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012856
1267770 - 1447585
179816