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Intron Name: Anas_platyrhynchos_platyrhynchos_13_12682035_12711410_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12682035 - 12711410

Intron Length:

29376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCATTAATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTAATA

Flanking Amino Acid:

VLQSFMVCLADDNTLHGPVF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

72.8

39.1

Major BPS

100

1.24

0.5

100

Major PPT

75.4

0.57

69.8

39.4

Minor 5ss

37.8

-1.4

3.5

55.9

48.3

Minor BPS

0.94

1.4

88.77

27.5

Associated Gene:

Gene:

CNTN4

Ensembl Gene ID:

ENSAPLG00000004320

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029510

12634312 - 12711550

77239

ENSAPLT00000004510

12566330 - 12711550

145221