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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1273624_1315605_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1273624 - 1315605
Intron Length:
41982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTTCAAATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAT
Flanking Amino Acid:
VWTEAYIDSTLADDQGLVLM
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73
0.52
0.9
67.8
37
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
59.8
0.39
1.6
76.7
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012290
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012856
1267770 - 1447585
179816