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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13061774_13062471_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13061774 - 13062471
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
TATGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGTCTTTACA
Flanking Amino Acid:
SEEIRIPKISSLSSGEINLS
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
67.8
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.75
0.9
76.6
37.2
Minor 5ss
39.8
-1.1
3.1
48.4
42.2
Minor BPS
60.9
0.34
1.7
71.72
40.6

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037941
13061638 - 13174511
112874
ENSAPLT00000005886
13061638 - 13174511
112874