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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13076515_13076854_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13076515 - 13076854
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTAGTTTACTT
Flanking Amino Acid:
GMHHFERIGGESVGDLMIRN
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.8
0.67
0.9
70.6
40.1
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
48.7
-0
2
70.38
41.4

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005886
13061638 - 13174511
112874
ENSAPLT00000037941
13061638 - 13174511
112874