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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13098080_13099046_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13098080 - 13099046
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGCTCTTTATTT
Flanking Amino Acid:
IYANAELRVIAAAPDFSKNP
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
63.5
0.5
1.6
76.04
41.4

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037941
13061638 - 13174511
112874
ENSAPLT00000005886
13061638 - 13174511
112874