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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13099177_13102463_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13099177 - 13102463
Intron Length:
3287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
LKNGQPLTSEERIQIYNGTL
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
88.3
0.86
0.8
89.3
25.7
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037941
13061638 - 13174511
112874
ENSAPLT00000005886
13061638 - 13174511
112874