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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13113456_13114920_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13113456 - 13114920
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATGTTCAACA
Flanking Amino Acid:
PPTPLILRSDGVMGEYEPKI
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.9
0.4
1
62.5
43
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
51.1
0.03
2
65.26
41

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037941
13061638 - 13174511
112874
ENSAPLT00000005886
13061638 - 13174511
112874