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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13122879_13138648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13122879 - 13138648
Intron Length:
15770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTGCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CAGGTCATAACA
Flanking Amino Acid:
LSRKAKLQFAYLENFETKTR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
66.8
0.38
1.1
67.3
38.2
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
48.9
-0
1.7
56.6
42.7

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005886
13061638 - 13174511
112874