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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13122879_13174376_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13122879 - 13174376
Intron Length:
51498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTGCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CAGGTCATAACA
Flanking Amino Acid:
ILLPFMSCSTDLENFETKTR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
66.8
0.38
1.1
67.3
38.2
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
48.9
-0
1.7
56.6
42.7

Associated Gene:

Gene:
CNTN6
Ensembl Gene ID:
ENSAPLG00000005639
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037941
13061638 - 13174511
112874